Neil MacAlasdair

Affiliations

Department of Biostatistics, University of Oslo, Oslo, Norway.

Publications (6)

Detecting co-selection through excess linkage disequilibrium in bacterial genomes.

NAR genomics and bioinformatics

Avec: Sudaraka Mallawaarachchi , Gerry Tonkin-Hill , Anna K Pöntinen , Jessica K Calland , Rebecca A Gladstone , Sergio Arredondo-Alonso , Neil MacAlasdair , Harry A Thorpe , Janetta Top , Samuel K Sheppard , David Balding , Nicholas J Croucher , Jukka Corander

Producing polished prokaryotic pangenomes with the Panaroo pipeline.

Genome biology

Avec: Gerry Tonkin-Hill , Neil MacAlasdair , Christopher Ruis , Aaron Weimann , Gal Horesh , John A Lees , Rebecca A Gladstone , Stephanie Lo , Christopher Beaudoin , R Andres Floto , Simon D W Frost , Jukka Corander , Stephen D Bentley , Julian Parkhill

Diversification in immunogenicity genes caused by selective pressures in invasive meningococci.

Microbial genomics

Avec: Philip H C Kremer , John A Lees , Bart Ferwerda , Merijn W Bijlsma , Neil MacAlasdair , Arie van der Ende , Matthijs C Brouwer , Stephen D Bentley , Diederik van de Beek

Genome-wide epistasis and co-selection study using mutual information.

Nucleic acids research

Avec: Johan Pensar , Santeri Puranen , Brian Arnold , Neil MacAlasdair , Juri Kuronen , Gerry Tonkin-Hill , Maiju Pesonen , Yingying Xu , Aleksi Sipola , Leonor Sánchez-Busó , John A Lees , Claire Chewapreecha , Stephen D Bentley , Simon R Harris , Julian Parkhill , Nicholas J Croucher , Jukka Corander

The global meningitis genome partnership.

The Journal of infection

Avec: Elizabeth Rodgers , Stephen D Bentley , Ray Borrow , Holly B Bratcher , Sylvain Brisse , Angela B Brueggemann , Dominique A Caugant , Jamie Findlow , LeAnne Fox , Linda Glennie , Lee H Harrison , Odile B Harrison , Robert S Heyderman , Melissa Jansen van Rensburg , Keith A Jolley , Brenda Kwambana-Adams , Shamez Ladhani , Marc LaForce , Michael Levin , Jay Lucidarme , Neil MacAlasdair , Jenny Maclennan , Martin C J Maiden , Laura Maynard-Smith , Alessandro Muzzi , Philipp Oster , Charlene M C Rodrigues , Olivier Ronveaux , Laura Serino , Vinny Smith , Arie van der Ende , Julio Vázquez , Xin Wang , Saber Yezli , James M Stuart

Pan-pathogen deep sequencing of nosocomial bacterial pathogens in Italy in spring 2020: a prospective cohort study.

The Lancet. Microbe

Avec: Harry A Thorpe , Maiju Pesonen , Marta Corbella , Henri Pesonen , Stefano Gaiarsa , Christine J Boinett , Gerry Tonkin-Hill , Tommi Mäklin , Anna K Pöntinen , Neil MacAlasdair , Rebecca A Gladstone , Sergio Arredondo-Alonso , Teemu Kallonen , Dorota Jamrozy , Stephanie W Lo , Chrispin Chaguza , Grace A Blackwell , Antti Honkela , Anita C Schürch , Rob J L Willems , Cristina Merla , Greta Petazzoni , Edward J Feil , Patrizia Cambieri , Nicholas R Thomson , Stephen D Bentley , Davide Sassera , Jukka Corander

Réseau de co-auteurs

Stephen D Bentley 5 collaborations

Gerry Tonkin-Hill 4 collaborations

Jukka Corander 4 collaborations

Rebecca A Gladstone 3 collaborations

John A Lees 3 collaborations

Anna K Pöntinen 2 collaborations

Sergio Arredondo-Alonso 2 collaborations

Harry A Thorpe 2 collaborations

Nicholas J Croucher 2 collaborations

Julian Parkhill 2 collaborations

Arie van der Ende 2 collaborations

Maiju Pesonen 2 collaborations

Sudaraka Mallawaarachchi 1 collaboration

Jessica K Calland 1 collaboration

Janetta Top 1 collaboration

Samuel K Sheppard 1 collaboration

David Balding 1 collaboration

Christopher Ruis 1 collaboration

Aaron Weimann 1 collaboration

Gal Horesh 1 collaboration

Stephanie Lo 1 collaboration

Christopher Beaudoin 1 collaboration

R Andres Floto 1 collaboration

Simon D W Frost 1 collaboration

Philip H C Kremer 1 collaboration

Bart Ferwerda 1 collaboration

Merijn W Bijlsma 1 collaboration

Matthijs C Brouwer 1 collaboration

Diederik van de Beek 1 collaboration

Johan Pensar 1 collaboration

Santeri Puranen 1 collaboration

Brian Arnold 1 collaboration

Juri Kuronen 1 collaboration

Yingying Xu 1 collaboration

Aleksi Sipola 1 collaboration

Leonor Sánchez-Busó 1 collaboration

Claire Chewapreecha 1 collaboration

Simon R Harris 1 collaboration

Elizabeth Rodgers 1 collaboration

Ray Borrow 1 collaboration

Holly B Bratcher 1 collaboration

Sylvain Brisse 1 collaboration

Angela B Brueggemann 1 collaboration

Dominique A Caugant 1 collaboration

Jamie Findlow 1 collaboration

LeAnne Fox 1 collaboration

Linda Glennie 1 collaboration

Lee H Harrison 1 collaboration

Odile B Harrison 1 collaboration

Robert S Heyderman 1 collaboration

Melissa Jansen van Rensburg 1 collaboration

Keith A Jolley 1 collaboration

Brenda Kwambana-Adams 1 collaboration

Shamez Ladhani 1 collaboration

Marc LaForce 1 collaboration

Michael Levin 1 collaboration

Jay Lucidarme 1 collaboration

Jenny Maclennan 1 collaboration

Martin C J Maiden 1 collaboration

Laura Maynard-Smith 1 collaboration

Alessandro Muzzi 1 collaboration

Philipp Oster 1 collaboration

Charlene M C Rodrigues 1 collaboration

Olivier Ronveaux 1 collaboration

Laura Serino 1 collaboration

Vinny Smith 1 collaboration

Julio Vázquez 1 collaboration

Xin Wang 1 collaboration

Saber Yezli 1 collaboration

James M Stuart 1 collaboration

Marta Corbella 1 collaboration

Henri Pesonen 1 collaboration

Stefano Gaiarsa 1 collaboration

Christine J Boinett 1 collaboration

Tommi Mäklin 1 collaboration

Teemu Kallonen 1 collaboration

Dorota Jamrozy 1 collaboration

Stephanie W Lo 1 collaboration

Chrispin Chaguza 1 collaboration

Grace A Blackwell 1 collaboration

Antti Honkela 1 collaboration

Anita C Schürch 1 collaboration

Rob J L Willems 1 collaboration

Cristina Merla 1 collaboration

Greta Petazzoni 1 collaboration

Edward J Feil 1 collaboration

Patrizia Cambieri 1 collaboration

Nicholas R Thomson 1 collaboration

Davide Sassera 1 collaboration